Società Italiana
di Biofisica e Biologia
Molecolare

SIBBM 2023 • Frontiers in Molecular Biology

Beyond Genomics: Next Generation Molecular Biology

Bari | Italy 26-28 June 2023

SIBBM 2023 • Frontiers in Molecular Biology

Beyond Genomics: Next Generation Molecular Biology

Bari | Italy 26-28 June 2023

SIBBM 2023 • Frontiers in Molecular Biology

Beyond Genomics: Next Generation Molecular Biology

Bari | Italy 26-28 June 2023

Programme

  • 12:00-13:30 Pre-conference light buffet
    13:30-14:00 Opening Remarks and Institutional Welcome
    Session I - Genomic Landscape and Architecture
    CHAIRS: Valeria Poli, Graziano Pesole
    14:00-14:30 Elzo de Wit, Netherlands Cancer Institute, Amsterdam, The Netherlands
    Functional dissection of the 3D genome
    14:30-14:45 Francesca Gorini, University of Naples 'Federico II', Italy
    The accumulation of 8-oxodG at super-enhancers marks fragile CTCF-mediated chromatin loops
    14:45-15:00 Alessandro Bertero, University of Turin, Italy
    Dysregulated 3D chromatin structure mechanism in congenital heart disease revealed by chamber-specific cardiac organoids
    15:00-15:15 Giulia Buonaiuto, Sapienza University of Rome, Italy
    From mouse to human: how RNA epigenetic influences cardiomyocytes maturation
    15:15-15:30 Federico Lazzaro, University of Milan, Italy
    Counteracting G-quadruplex-induced genome instability
    15:30-16:00 Marcelo Nollmann, Centre de Biochimie Structurale, INSERM/CNRS, Montpellier, France
    Inspecting roles of 3D chromatin organization in transcription by multiplexed imaging
    16:00-16:15 Francesco Nicassio, IIT, Milan, Italy
    Transcriptional, epigenetic and genetic determinants triggering distinct cancer phenotypes coexist in the same cancer population
    16:15-16:30 Sara Pini, University of Modena and Reggio Emilia, Italy
    A human pan-genomic analysis provides insights into the genetic and epigenetic complexity of phenotypes associated with facioscapulohumeral muscular dystrophy
    16:30-16:45 Davide Bressan, CIBIO, Trento, Italy
    Increased genomic instability and reshaping of tissue microenvironment drive ARID1A-dependent cancer formation
    16:45-17:00 Renée Duardo, University of Bologna, Italy
    Topoisomerase I-DNA cleavage complexes induce genome instability at early replicating DNA loop anchors
    17:00-19:00 Poster Session 1 and coffee break
    19:00-20:30 Symposium: Science and Society
    Research Integrity and Open Science

    Emma Lazzeri (GARR, Italy)
    Alicia Estacio Gómez (Open Research Europe, F1000. United Kingdom)

    20:30 Welcome Cocktail in the garden
  • Session II - Epigenomics
    CHAIRS: Lucia Altucci, Salvatore Oliviero
    9:00-9:30 Tiziana Bonaldi, IEO, Milan, Italy
    A proteomic perspective on the role of protein methyltransferases in cancer heterogeneity and plasticity
    9:30-9:45 Elena Di Nisio, Sapienza University of Rome, Italy
    A truncated and catalytically inactive isoform of KDM5B histone demethylase accumulates in breast cancer cells and regulates H3K4 tri-methylation and gene expression
    9:45-10:00 Artem Smirnov, University of Rome 'Tor Vergata', Italy
    Epigenetic priming of an epithelial enhancer by p63 and CTCF controls expression of a skin-restricted gene XP33
    10:00-10:15 Francesca Guarino, University of Catania, Italy
    VDAC1 gene promoter regulation: exploring transcription factors functionality and genome methylation
    10:15-10:30 Masoumeh ElyasiDashtaki, University of Insubria, Italy
    UHRF1 is a better prognostic factor in colorectal and gastric cancers and thymoma by negatively regulating EMT factors and cancer stemness pathway genes
    10:30-11:00 Coffee break
    Session III - Biomolecular Condensates
    CHAIRS: Tiziana Bonaldi, Gianni Cuda
    11:00-11:30 Simon Alberti, Technische Universität Dresden, Germany
    Biomolecular condensates in health and disease
    11:30-11:45 Serena Carra, University of Modena and Reggio Emilia, Italy
    Small HSPs as molecular chaperones at the interface between proteins and lipids
    11:45-12:00 Francesco Panariello, TIGEM, Pozzuoli, Italy
    A paracrine HGF-MET-STAT3 axis oversees cellular transition towards human pluripotency
    12:00-12:15 Elena Carbognin, University of Padua, Italy
    Esrrb guides naive pluripotent cells through the formative transcriptional programme
    12:15-12:30 Lavinia Grasso, University of Milan, Italy
    DNA polymerase η, ribonucleotides and Nanopore sequencing: a story of replication stress
    12:30-14:00 Short Talks By Illumina (Paolo Caiella) and Carlo Erba (Daniele Zeni)
    12:30-14:00 Lunch
    Session IV - RNA Metabolism and Epitranscriptomics
    CHAIRS: Serena Carra, Ernesto Picardi
    14:00-14:30 Michael Jantsch, Medical University of Vienna, Austria
    Regulating innate immunity via RNA-editing
    14:30-14:45 Luca La Via, University of Brescia, Italy
    RNA editing of CYFIP2 regulates actin related cellular migration and neuronal development in vitro
    14:45-15:00 Toma Tebaldi, University of Trento, Italy
    Inhibition of METTL3 and m6A induces accumulation of endogenous double-stranded RNAs and innate immune response
    15:00-15:15 Sajid Amin, University of Campania 'Luigi Vanvitelli', Naples, Italy
    ZC3H13 is a crucial target involve in the survival of AML
    15:15-15:30 Michela Lo Conte, Magna Græcia University, Catanzaro, Italy
    The ZZZ3, a subunit of the ATAC complex, is important for human ESCs homeostasis, self-renewal, and regulation of ribosome biogenesis
    15:30-17:30 Poster Session 2 and coffee break
    17:30-18:00 Riccardo Cortese Lecture
    Irene Bozzoni, Sapienza University of Rome, Italy
    Decoding non-coding RNA function in physiology and pathology
    18:00-18:15 Ermes Filomena, University of Bari, Italy
    Providing new insights on non-coding RNAs involvement in Alzheimer’s disease through a comprehensive bioinformatic analysis based on Hippocampus and Fusiform Gyrus RNA-seq datasets
    18:15-18:30 Fabio Desideri, IIT, Rome, Italy
    RNA-RNA interactions at the onset of human motor neurons specification: CyCoNP lncRNA sustains NCAM1 expression by a direct-binding mechanism
    18:30-18:45 Chiara Barzan, CNR, Pavia, Italy
    A novel post-transcriptional circuit required for tumor angiogenesis and cancer growth
    18:45-19:00 Livia Caizzi, University of Turin, Italy
    Efficient RNA polymerase II pause release requires U2 snRNP function
    19:00-20:30 SIBBM members' general assembly
    20:30 Social dinner
  • Session V - Gene Function and Therapeutic Applications
    CHAIRS: Michela A. Denti, Graziano Martello
    9:00-9:30 Mirko Pinotti, University of Ferrara, Italy
    Ribosome readthrough over premature termination codons: molecular mechanisms and pathophysiological implications for genetic disorders
    9:30-9:45 Daniela Di Girolamo, CEINGE, Naples, Italy
    Identification of a novel genome editing approach for the treatment of AEC syndrome
    9:45-10:00 Clara Zannino, Magna Græcia University, Catanzaro, Italy
    Low endogenous levels of heat shock protein beta-1 impair antioxidant response in patients carrying SCN1A mutations
    10:00-10:15 Laura Marchetti, University of Pisa, Italy
    Extracellular vesicles as carriers of RNA therapeutics: possible role of the p75NTR-NGF-TrkA ternary complex to support targeted delivery
    10:15-10:30 Ciro Iaccarino, University of Sassari, Italy
    Modulation of vesicle trafficking rescues Parkinson’s phenotype related to LRRK2 mutations
    10:30-11:00 Coffee break
    11:00-11:30 EMBL Lecture
    Nina Papavasiliou, German Cancer Research Centre (DKFZ), Heidelberg, Germany
    Targeted RNA editing as an enhancer of immunotherapy
    11:30-11:45 Domenico Liguoro, Sapienza University of Rome, Italy
    The interplay between miR-579-3p and MITF controls melanoma progression and resistance to targeted therapies
    11:45-12:00 Erica Gasparotto, INGM, Milan, Italy
    LINE1 expression dynamics in colorectal cancer sensitivity to DNA damage
    12:00-12:15 Lorena Quirico, MBC, Turin, Italy
    Axl-miR-214sponge chimeric aptamer reduces breast cancer and melanoma dissemination
    12:15-12:30 Marcella Cesana, TIGEM, Pozzuoli, Italy
    TFEB is a master regulator of syncytiotrophoblast formation in the placenta
    12:30-13:30 Prizes and Wrap-up
  • The poster's maximum size is A0 (841 x 1189 mm; width x height).

    Correct format... poster should be PORTRAIT  poster should NOT be LANDSCAPE Wrong format...

    Posters with an odd number will be presented during Poster Session 1 (Monday, 26 June, 17:00-19:00). Posters with an even number will be presented during Poster Session 2 (Tuesday, 27 June, 15:30-17:30).

    P.1 Susanna Ambrosio, Naples
    Dissecting the relationship between DNA repair and autophagy to improve the efficacy of anticancer treatment

    P.2 Vito Antonio Amico, Rome
    The study of cross-kingdom regulation of plant microRNAs with possible anti-inflammatory and anti-tumor activity in human

    P.3 Mehrad Babaei, Naples
    METTL16 is a key target for chronic myeloid leukemia survival

    P.4 Michele Bissoli, Verona
    Human thioesterase ACOT8 has an impact on in vitro HIV-1 infectivity

    P.5 Chiara Bugelli, Turin
    Functional characterization of lncRNAs involved in epigenetic regulation of human neural development and neurological disorders in human brain organoids

    P.6 Carmen Caiazza, Naples
    8-oxodG accumulation within human mitochondrial genome associates with transcription

    P.7 Tiziana Castrignanò, Viterbo
    De novo transcriptome assembly and annotation for gene discovery in Salamandra salamandra at the larval stage

    P.8 Martina Coco, Turin
    MiR-148b regulates cell metabolism and affects tumor progression in melanoma and breast cancer

    P.9 Andrea Corsi, Verona
    Tau exon 6 alternative splicing is regulated by the RNA-binding proteins PTBP1 and RBM20

    P.10 Sharon Cox, Bari
    Development of a pipeline for identifying mito-nuclear variants in patients with amyotrophic lateral sclerosis using whole genome and exome sequencing data

    P.11 Claudia Crosio, Sassari
    Effects of cyanotoxins triggers in neurodegenerative cellular models

    P.12 Salvatore Cubisino, Catania
    Evaluation of ion channel activity of envelope protein E2 from SARS-CoV-2

    P.13 Eleonora D'Ambra, Rome
    Circ-Dlc1 KO affects long-term potentiation in cortical-striatum circuitry in vivo and in vitro

    P.14 Teresa Dalle Nogare, Trento
    Analysis of the expression profile of genes regulated by treatment with glucorticoids and retinoic acid in lung cancer

    P.15 Ilenia De Leo, Caserta
    RNA regulatory networks governed by miR-125a in hepatocarcinoma cells

    P.16 Benedetta Di Chiara Stanca, Lecce
    Analysis of Concentrated Growth Factors (CGFs): cell population and angiogenic potential

    P.17 Valeria Di Gioia, Milan
    LINE1 elements are novel epigenetic players of T cell quiescence through phase separation

    P.18 Anna Di Matteo, Pavia
    NOVA2 upregulation plays a pervasive role in alternative splicing changes of gastric cancer endothelium

    P.19 Elisa Ferracci, Povo (TN)
    Deciphering the role of the PR-Dub complex during liver homeostasis and regeneration

    P.20 Alessandro Ferrando, Trieste
    SFPQ controls genomic stability by suppressing RNA:DNA hybrids in human cancer cells

    P.21 Arianna Finizio, Naples
    Retargeted or attenuated Herpes Simplex Virus 1 genomes as a platform for arming strategies in cancer therapy

    P.22 Adriano Fonzino, Bari
    Detecting C-to-U RNA editing by direct RNA sequencing

    P.23 Davide Gabellini, Milan
    DUX4-r exerts a neomorphic activity that depends on a novel co-factor in acute lymphoblastic leukemia

    P.24 Umberto Galderisi, Naples
    Meta-analysis of senescent cell secretomes to identify common and specific features of the different senescent phenotypes: a tool for developing new senotherapeutics

    P.25 Paolo Gandellini, Milan
    The pancancer overexpressed NFYC antisense 1 controls cell cycle mitotic progression through in cis and in trans modes of action

    P.26 Laura Giannotti, Lecce
    Role of quercetin in the NAFLD treatment: reduction of lipid accumulation and inhibition of de novo fatty acid synthesis

    P.27 Meriem Hamadou, Trento
    Mining common genetic variants impacting on allele-specific translation and cancer risk

    P.28 Bablu Kumar, Milan
    Assessing gut microbiome health using integrative omics data analysis with machine learning predictions

    P.29 Erika Lorusso, Bari
    Development of a gut microbiome eubiosis/dysbiosis index based on DNA metabarcoding data by using Machine Learning approach

    P.30 Barbara Mandriani, Bari
    Tumor neoantigens shape the immune microenvironment of panNETs: an in silico analysis

    P.31 Stefania Martucciello, Fisciano (SA)
    The interaction between TBX1 and VEGFR3 in cardiac development

    P.32 Pietro Mazzacuva, Rome
    Detecting A-to-I RNA editing by Convolutional Neural Networks

    P.33 Angela Messina, Catania
    Analysis of human VDAC pseudogenes highlights an important role of VDAC1P8 pseudogene in acute myeloid leukemia (AML)

    P.34 Livio Muccillo, Benevento
    The Sp1-miR-27a-ZBTB10 axis mediates the molecular effects of quercetin in colorectal cancer cells

    P.35 Anna Noviello, Naples
    Analysis of the role of the nuclear lamina in genomic stability

    P.36 Francesca Orso, Novara
    miR-214 mediated stroma-tumor cell crosstalk during tumor progression

    P.37 Alessandro Palma, Rome
    Integration of transcriptomic data to dissect the role of long non coding RNAs in amyotrophic lateral sclerosis

    P.38 Filippo Passarino, Verona
    FGFR3-G375C associated with achondroplasia shows a novel kinase active isoform of 50 kDa

    P.39 Gerardo Pepe, Rome
    A feature-based meta-analysis approach to unravel the pathophysiological landscape of autoimmune diseases

    P.40 Francesca Cristiana Piritore, Verona
    Modulation of miR 146b-5p expression during the aging

    P.41 Anna Piscone, Naples
    8-oxodG and G4: deciphering the crosstalk between DNA damage and transcription regulation

    P.42 Elham Safadeh, Naples
    Alternative splicing and cancer epigenetic: BCLAF1 role in colorectal cancer

    P.43 Michele Sallese, Chieti
    A multi-omics approach to shed light on the pathogenetic mechanisms of Marinesco-Sjogren's syndrome

    P.44 Valentina Salsi, Modena
    FRG2A is part of a novel family of lncRNAs affecting nucleolus function in FSHD cells

    P.45 Antonella Sarnataro, Naples
    Dissecting DNA methylation patterns at single-molecule level through next-generation sequencing using EpiStatProfileR

    P.46 Elisabetta Sbisà, Bari
    CNRBiOmics and ELIXIRxNextGenIT: establishment and enhancement of the Integrative Omics platform of ELIXIR-IT, the Italian Node of the European Research Infrastructure for Life Sciences

    P.47 Eleonora Stanca, Lecce
    Cellular and molecular component of concentrated growth factor induced osteogenic differentiation and improved the osteointegration of dental implants

    P.48 Maria Letizia Taddei, Florence
    Metabolic adaptations driving 5-Fluorouracil resistance in colorectal cancer: PHGDH heterogeneity as a key driver

    P.49 Anna Vareschi, Verona
    RUNX2 promotes metastatic ability of melanoma cells by increasing CXCR4 expression

    P.50 Enza Maria Verde, Modena
    Loss of PML nuclear bodies in familial Amyotrophic Lateral Sclerosis and Frontotemporal Dementia

    P.51 Zaibunnisa Zaibunnisa, Varese
    IGFL1 is a new ERG induced and secreted factor in prostate cancer with immune regulatory activity and clinical relevance

    P.52 Paola Zanfardino, Bari
    Mechanisms of pathogenicity in OPA1 deficient fibroblasts

    P.53 Sharazed Zouari, Verona
    Physical activity modulates miRNA expression in serum extracellular vesicles